Files
cs249r_book/book/tools/scripts/README.md
Vijay Janapa Reddi 152b8630dc fix(ci): clear all 8 failing pre-commit hooks on dev (#1413)
* fix(content): clear two mitpress-above-below pre-commit failures

The "📚 Book ·  Validate (Dev)" workflow has been failing on dev for
8+ consecutive runs because the mitpress-above-below pre-commit hook
flags spatial references like "above"/"below" inside body prose and
figure captions (the MIT Press style guide wants @sec-/@fig- cross-refs
or "earlier"/"later" instead). Two pre-existing violations were tripping
the hook on every push:

  - book/quarto/contents/vol1/responsible_engr/responsible_engr.qmd:1604
    fig-cap for fig-data-governance-pillars said "obligations discussed
    below: privacy, security, compliance, and transparency" — but those
    four obligations are *immediately* listed in the same caption, so
    "discussed below" was redundant. Reworded to "obligations of
    privacy, security, compliance, and transparency …".

  - book/quarto/contents/vol2/network_fabrics/network_fabrics.qmd:1217
    fig-cap for fig-congestion-cascade said "the PFC backpressure
    cascades described below." Reworded to "described later in this
    section." which is what the hook wants.

After our 4 release-prep merges (PR-1/2/7/12) cleaned up the other
hook failures (spelling, bibtex tidy, pipe tables, contractions,
mitpress-vs-period, …), this was the last remaining failing hook.
Verified locally:

  pre-commit run mitpress-above-below --all-files
  MIT Press: No above/below spatial refs (use cross-refs).....Passed

These are pure copy-edits to figure captions; no semantic change to
the diagrams or surrounding text.

* fix(check-internal-links): suppress 4 categories of false positives

The Tier 1 link checker (shipped in PR #1404) was over-eager and
flagged author content as broken in four documented patterns:

1. TikZ source inside HTML comments. Link regex matched `\node[mycycle](B1)`
   as a Markdown link `[mycycle](B1)`. Fix: strip `<!-- ... -->` bodies
   before scanning, preserving line/column offsets so any *real* failure
   we report stays accurate.
2. Quarto cross-references like `[Foo](@sec-bar)`, `@fig-x`, `@tbl-y`.
   These resolve through the project xref index at render time, not the
   filesystem; book/binder owns that validation. Fix: skip targets whose
   first token is `@sec-/@fig-/@tbl-/@eq-/@lst-/@thm-/@cor-/@def-/@exr-/
   @exm-/@prp-`.
3. Uppercase URL schemes (`HTTPS://`, `HTTP://`) — common after mobile
   auto-capitalize or copied citations. Fix: case-insensitive prefix
   match for the EXTERNAL_SCHEMES tuple.
4. GitHub-style emoji-prefix slugs in `.md` READMEs (e.g.
   `## 🎯 20 Progressive Modules` produces anchor `#-20-progressive-modules`
   on github.com, but Pandoc would slugify to `progressive-modules`).
   Fix: register both Pandoc-style and GitHub-style slugs as valid
   anchors so neither rendering target trips the checker.

Drops repo-wide broken-link count from 150 → 84 (false positives only;
no real link rot is masked). Real rot is fixed in a separate commit so
the checker improvement can be reviewed independently.

* fix(content): repair internal-link rot across 10 files

Concrete link rot the new checker (PR #1404) surfaced once its false
positives were cleared. None of these are stylistic; each link points
at a path or anchor that does not exist.

- README/README_{zh,ja,ko}.md (24 links): translation files live in
  README/ so paths to repo-root targets need a `../` prefix
  (`book/README.md` -> `../book/README.md`, etc.).
- mlsysim/docs/contributing.qmd (21 links): `../slides/...` pointed
  inside `mlsysim/`; the slides root is two levels up
  (`../../slides/...`).
- mlsysim/docs/cli-reference.qmd: `getting-started.qmd#bring-your-own-yaml-byoy`
  removed; retarget to `#defining-custom-models` (closest surviving
  section about user-supplied model specs).
- mlsysim/docs/for-engineers.qmd, for-instructors.qmd:
  `solver-guide.qmd#extending-mlsysim` no longer exists; retarget to
  `#writing-a-custom-solver` (the surviving custom-solver guide).
- book/tools/scripts/README.md: `../docs/BINDER.md` resolved to
  `book/tools/docs/BINDER.md` (nonexistent); the file actually lives
  at `book/docs/BINDER.md`, which is `../../docs/BINDER.md` from here.
- book/quarto/contents/frontmatter/index.qmd:
  `about.qmd#about-the-book-unnumbered` anchor was removed when the
  About heading was simplified; drop the anchor so the link lands at
  the top of the page (which IS the About section).
- tinytorch/datasets/tinytalks/README.md: `scripts/README.md` was
  never created; point at the directory listing instead.

* chore(pre-commit): exclude 3 forward-looking files from internal-link checker

Three files reference content that does not (yet) exist on the
filesystem; the references are intentional rather than rot, so they
should not block CI:

- labs/index.qmd: lists the 33 planned labs (vol1/lab_00..lab_16,
  vol2/lab_01..lab_16) as a roadmap. Links go live as each lab ships.
  De-linking now would lose the visual roadmap. When a lab lands the
  exclusion narrows naturally on its own.
- labs/PROTOCOL.md, labs/TEMPLATE.md: internal authoring docs that
  reference `../.claude/docs/labs/{PROTOCOL,TEMPLATE}.md`. The
  `.claude/` tree is per-worktree and not always present at the same
  relative path; these are author-tooling refs, not user-facing.

Net effect: the link checker is now green on a clean checkout. The
exclude block uses comments per existing convention so the rationale
is discoverable from the config alone.

* fix(content): clear codespell, contractions, and vs. pre-commit failures

Three pre-existing pre-commit hooks were failing on the dev branch
prior to the release-prep merges. Each is a small content normalization:

- codespell (2): re-declares -> redeclares (book/quarto/config/shared/README.md);
  unparseable -> unparsable (handled in the check-internal-links rewrite).
- contractions (2):
  * socratiq/socratiq.qmd callout: "If you're" -> "If you are".
  * nn_architectures fig-alt for the attention-visualization figure:
    "didn't" -> "did not". Alt-text is descriptive prose for screen
    readers, not a verbatim transcription of pixels, so expanding the
    contraction matches MIT Press style without changing the figure
    itself.
- mitpress-vs-period (6): bare `vs` -> `vs.` per MIT Press 2026 §10.5
  in benchmarking.qmd, distributed_training.qmd (x3 across two Python
  docstrings rendered in code listings), fault_tolerance.qmd, and
  inference.qmd. Code-listing strings are visible prose in the rendered
  PDF, so the rule applies there as well.

* chore: bibtex-tidy auto-format outputs

Outputs of the bibtex-tidy pre-commit hook (which auto-fixes its own
input). Picked up here so that running pre-commit on a clean checkout
no longer reports a "files were modified" failure for the same files
on every invocation. Pure formatting; no entry semantics changed.
2026-04-20 12:58:28 -04:00

1.6 KiB

Scripts directory

Python and shell automation used by the Machine Learning Systems textbook tooling. Most behavior is exposed through the Book Binder CLI; this tree is the implementation layer.

Use Binder first

From the repository root:

./book/binder validate all
./book/binder maintain repo-health
./book/binder help

If your shell is already in book/, use ./binder instead of ./book/binder.

Full command list, validation options, and setup: book/docs/BINDER.md.

Direct python3 book/tools/scripts/... use is for maintenance or cases not wired into Binder yet. Prefer ./book/binder when a subcommand exists.

Subfolder docs

Area README
Content tools content/README.md
Images images/README.md
Glossary glossary/README.md
Infra / CI helpers infrastructure/README.md
Utilities utilities/README.md
Extra script notes docs/README.md

Other directories (publish/, maintenance/, testing/, socratiQ/) are documented here only where needed; see source and --help on individual scripts.

Shell entrypoints (often run outside Binder)

These are common when you need the exact script interface:

./book/tools/scripts/publish/mit-press-release.sh --vol1
./book/tools/scripts/publish/publish.sh
./book/tools/scripts/maintenance/run_maintenance.sh

Python scripts

Use Python 3. Most modules support --help:

python3 book/tools/scripts/publish/extract_figures.py --help