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parth-mlx-decode-checkpoints
dhiltgen/ci
hoyyeva/editor-config-repair
parth-launch-codex-app
hoyyeva/fix-codex-model-metadata-warning
hoyyeva/qwen
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Originally created by @bjoernhommel on GitHub (May 2, 2025).
Original GitHub issue: https://github.com/ollama/ollama/issues/10538
Originally assigned to: @drifkin, @ParthSareen on GitHub.
Problem: As far as I know, structured outputs and reasoning models / thinking mode are currently incompatible. As I understand it, using
formatsuppresses next-token probability in the model output for any tokens not complying with the desired output structure, thereby "forcing" structured generation.I assume the reason for the incompatibility with reasoning models is that the probability for
<think>token also will be set to zero, effectively disabling thinking mode for structured outputs.Proposed solution(s):
As @kasnerz suggested here, separating thinking output from the rest of the response should fix this.
A more hacky solution could be to first only suppress token probabilities for output outside of thinking tags, and secondly pruning the thinking-content from the final output.
@rick-github commented on GitHub (May 2, 2025):
What issues are you seeing with structured outputs and reasoning models? I did a quick check and got structured output from qwen3. Admittedly a simple test and maybe not the use case your are shooting for.
@nicolab28 commented on GitHub (May 3, 2025):
I use ai sdk, and I add a string "thinking" in my json.
With the model qwen3 4b 8b 30b and 32b it works, I can see its thinking
but the model 14b returns nothing at all, an empty json.
on the other hand I have $schema, and I've even already had the whole schema in the response.
Here are a few examples:
modelFullName ollama/qwen3:4b-q8_0
prompt: tu pourrais m'apporter une bière ?
lastObject {
"thinking": "L'utilisateur demande d'apporter une bière. Cependant, je n'ai pas d'appareil pour cela. Je dois informer qu'il ne peut pas faire cela.",
"message": "Désolé, je ne peux pas apporter de bière. Je n'ai pas d'appareil pour cela.",
"toolCalls": []
}
modelFullName ollama/qwen3:8b
prompt: tu pourrais m'apporter une bière ?
lastObject {
"thinking": "L'utilisateur demande à avoir une bière. Je dois vérifier si je peux effectuer cette action. Je n'ai pas d'outil pour apporter une bière. Je dois informer l'utilisateur que je ne peux pas répondre à cette demande et préciser que ma mise à jour est nécessaire.",
"message": "Désolé, je ne peux pas apporter de bière. Une mise à jour de mon système est nécessaire pour effectuer cette action.",
"toolCalls": [],
"$schema": "http://json-schema.org/draft-07/schema#"
}
modelFullName ollama/qwen3:14b
prompt: tu pourrais m'apporter une bière ?
lastObject {}
modelFullName ollama/qwen3:30b-a3b-q4_K_M
prompt: tu pourrais m'apporter une bière ?
lastObject {
"thinking": "L'utilisateur demande une bière. Je n'ai pas d'outil pour apporter une bière. Je dois lui dire que je ne peux pas le faire.",
"message": "Je ne peux pas vous apporter une bière. Je suis un assistant vocal.",
"toolCalls": [],
"$schema": "http://json-schema.org/draft-07/schema#"
}
modelFullName ollama/qwen3:32b-q4_K_M
prompt: tu pourrais m'apporter une bière ?
lastObject {
"thinking": "Je ne peux pas apporter de bière à Nicolas, car je n'ai pas de fonctionnalité permettant de manipuler des objets physiques. Je peux suggérer qu'il aille en chercher une lui-même.",
"message": "Désolé, je ne peux pas apporter de bière. Tu devras aller en chercher une toi-même.",
"toolCalls": []
}
modelFullName ollama/qwen3:4b-q8_0
prompt: allume la lumière de la cuisine pendant 10 secondes
lastObject {
"thinking": "L'utilisateur demande d'allumer la lumière de la cuisine pendant 10 secondes. Je dois utiliser l'outil 'onoff' pour allumer la cuisine et ensuite 'wait' pour attendre 10 secondes.",
"message": "La lumière de la cuisine est allumée. Elle restera allumée pendant 10 secondes.",
"toolCalls": [
{
"tool": "onoff",
"args": {
"dev": "CUISINE",
"on": true
}
},
{
"tool": "wait",
"args": {
"sec": 10
}
}
]
}
modelFullName ollama/qwen3:8b
prompt: allume la lumière de la cuisine pendant 10 secondes
lastObject {
"thinking": "L'utilisateur demande d'allumer la lumière de la cuisine pendant 10 secondes. Je dois d'abord allumer la lumière, puis attendre 10 secondes avant de l'éteindre.",
"message": "Je vais allumer la lumière de la cuisine pendant 10 secondes.",
"toolCalls": [
{
"tool": "onoff",
"args": {
"dev": "CUISINE",
"on": true
}
},
{
"tool": "wait",
"args": {
"sec": 10
}
},
{
"tool": "onoff",
"args": {
"dev": "CUISINE",
"on": false
}
}
]
}
modelFullName ollama/qwen3:14b
prompt: allume la lumière de la cuisine pendant 10 secondes
lastObject {}
modelFullName ollama/qwen3:30b-a3b-q4_K_M
prompt: allume la lumière de la cuisine pendant 10 secondes
lastObject {
"thinking": "L'utilisateur demande d'allumer la lumière de la cuisine pendant 10 secondes. Pour cela, je dois d'abord allumer l'appareil CUISINE en utilisant le tool onoff. Ensuite, je dois attendre 10 secondes avec le tool wait. Enfin, je dois éteindre l'appareil CUISINE avec le tool onoff. Je vais donc appeler les outils onoff, wait, puis onoff à nouveau.",
"message": "Je vais allumer la lumière de la cuisine pendant 10 secondes.",
"toolCalls": [
{
"tool": "onoff",
"args": {
"dev": "CUISINE",
"on": true
}
},
{
"tool": "wait",
"args": {
"sec": 10
}
},
{
"tool": "onoff",
"args": {
"dev": "CUISINE",
"on": false
}
}
]
}
modelFullName ollama/qwen3:32b-q4_K_M
prompt: allume la lumière de la cuisine pendant 10 secondes
lastObject {
"thinking": "L'utilisateur souhaite allumer la lumière de la cuisine pendant 10 secondes. Je dois d'abord allumer l'appareil, puis l'éteindre après le délai.",
"message": "Je vais allumer la lumière de la cuisine et l'éteindre après 10 secondes.",
"toolCalls": [
{
"tool": "onoff",
"args": {
"dev": "CUISINE",
"on": true
}
},
{
"tool": "wait",
"args": {
"sec": 10
}
},
{
"tool": "onoff",
"args": {
"dev": "CUISINE",
"on": false
}
}
]
}
@rick-github commented on GitHub (May 3, 2025):
If other models work and qwen3:14b doesn't, that would seem to be a problem with the model.
@functorism commented on GitHub (May 16, 2025):
@rick-github Can you please read the original issue again.
@bjoernhommel You're absolutely right - there indeed needs to exist more flexibility/control over the logit biasing for structured output when reasoning models are used.
The entire point here is that using a reasoning model with structured output should not require full omission of reasoning. Ollama needs to facilitate the co-existence of reasoning + structured output.
@functorism commented on GitHub (May 16, 2025):
https://github.com/ollama/ollama/pull/10584 - WIP thinking API support
@ParthSareen commented on GitHub (May 16, 2025):
Once the thinking API lands, I can take a look and see how to do thinking generation -> applying the masks only for content after. In an ideal world we can have "thinking" enabled and then do structured outputs after that portion. Although the example @rick-github gave is a good way to go about it atm.
@iamFIREcracker commented on GitHub (Jun 27, 2025):
Assuming we could indeed get an LLM to output both thinking and structured output, would there be any advantages to the solution proposed by @rick-github? I mean, anyone has any idea if reasoning LLMs will produce better chain of thoughts if done inside the standard tags vs using structured output that includes one slot for the reasoning? I would assume the chain of thought inside the tag to be qualitatively better as the model got trained on it, but I have no data to back up this assumption.
@morrisalp commented on GitHub (Aug 17, 2025):
Too bad this is not supported now! I am migrating from ollama to llama.cpp specifically because of this issue.
Impressionistically, I found using a reasoning tag in JSON output performs much worse.
Supporting GBNF would also solve this issue but it seems like it's not being considered (#6237 #11911 #5899) for reasons that I don't fully understand.
@sjsone commented on GitHub (Aug 23, 2025):
@morrisalp I had the same issue and created a MR https://github.com/ollama/ollama/pull/12055
Please test it and give the MR some props
@guilhermecxe commented on GitHub (Sep 25, 2025):
The paper that showed the benefits of CoT (https://arxiv.org/abs/2201.11903) concluded that exposing the reasoning after the answer did't was as effective as reasoning before answer, so I think that if we ensure the generation of thinking before the answer of interest, we can get similar results, yes.