cs249r_book/pyproject.toml

[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "mlsysbook"
version = "1.0.0"
description = "Machine Learning Systems Textbook - Tools and Scripts"
readme = "README.md"
requires-python = ">=3.9"
license = {text = "MIT"}
authors = [
    {name = "MLSysBook Contributors", email = "info@mlsysbook.ai"}
]
keywords = ["machine-learning", "systems", "textbook", "education", "ai"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Education",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Education",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
    "Topic :: Documentation",
    "Topic :: Text Processing :: Markup",
]

dependencies = [
    # Core dependencies for Quarto/Jupyter integration
    "jupyterlab-quarto>=0.3.0",
    "jupyter>=1.0.0",
    
    # Bibliography and document processing
    "pybtex>=0.24.0",
    "pypandoc>=1.11",
    "pyyaml>=6.0",
    
    # Data processing and validation
    "pandas>=2.0.0",
    "numpy>=1.24.0",
    "jsonschema>=4.0.0",
    
    # Image processing
    "Pillow>=9.0.0",
    
    # HTTP and API interactions
    "requests>=2.31.0",
    
    # Text processing
    "titlecase>=2.4.1",
    
    # Terminal output and UI
    "rich>=13.0.0",
    
    # Type checking and validation
    "typing-extensions>=4.5.0",
    
    # Utilities
    "click>=8.0.0",
    "pathlib2>=2.3.0; python_version<'3.11'",
]

[project.optional-dependencies]
dev = [
    # Testing
    "pytest>=7.0.0",
    "pytest-cov>=4.0.0",
    "pytest-mock>=3.10.0",
    "pytest-asyncio>=0.21.0",
    
    # Code quality
    "black>=23.0.0",
    "isort>=5.12.0",
    "flake8>=6.0.0",
    "mypy>=1.0.0",
    "pylint>=2.17.0",
    
    # Security
    "bandit>=1.7.0",
    "safety>=2.3.0",
    
    # Documentation
    "sphinx>=6.0.0",
    "sphinx-rtd-theme>=1.2.0",
    
    # Pre-commit hooks
    "pre-commit>=3.0.0",
]

ai = [
    # AI/ML specific dependencies
    "openai>=1.0.0",
    "sentence-transformers>=2.2.0",
    "transformers>=4.21.0",
    "torch>=1.12.0",
    "scikit-learn>=1.3.0",
    "gradio>=3.40.0",
    "ollama>=0.1.0",
]

build = [
    # Build and publishing tools
    "twine>=4.0.0",
    "build>=0.10.0",
    "setuptools>=61.0",
    "wheel>=0.40.0",
]

[project.urls]
Homepage = "https://mlsysbook.ai"
Documentation = "https://docs.mlsysbook.ai"
Repository = "https://github.com/mlsysbook/mlsysbook"
Issues = "https://github.com/mlsysbook/mlsysbook/issues"
Changelog = "https://github.com/mlsysbook/mlsysbook/blob/main/CHANGELOG.md"

[project.scripts]
binder = "book.cli.main:main"
mlsysbook = "book.cli.main:main"

[tool.setuptools.packages.find]
where = ["."]
include = ["book*", "book.tools*", "book.cli*"]
exclude = ["tests*", "docs*"]

[tool.setuptools.package-data]
"book.tools.scripts" = ["**/*.yaml", "**/*.yml", "**/*.json", "**/*.txt", "**/*.md"]

# Black formatting configuration
[tool.black]
line-length = 100
target-version = ['py39', 'py310', 'py311', 'py312']
include = '\.pyi?$'
extend-exclude = '''
/(
  # Exclude build artifacts
  \.eggs
  | \.git
  | \.hg
  | \.mypy_cache
  | \.tox
  | \.venv
  | _build
  | buck-out
  | build
  | dist
  # Exclude generated files
  | contents/
  | quarto/
)/
'''

# isort import sorting configuration
[tool.isort]
profile = "black"
line_length = 100
multi_line_output = 3
include_trailing_comma = true
force_grid_wrap = 0
use_parentheses = true
ensure_newline_before_comments = true
src_paths = ["book/tools"]
skip_glob = ["book/quarto/contents/*", "book/quarto/*"]

# MyPy type checking configuration
[tool.mypy]
python_version = "3.9"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
disallow_untyped_decorators = true
no_implicit_optional = true
warn_redundant_casts = true
warn_unused_ignores = true
warn_no_return = true
warn_unreachable = true
strict_equality = true
show_error_codes = true

[[tool.mypy.overrides]]
module = [
    "pypandoc.*",
    "pybtex.*",
    "titlecase.*",
    "gradio.*",
    "ollama.*",
]
ignore_missing_imports = true

# Pytest configuration
[tool.pytest.ini_options]
minversion = "7.0"
addopts = [
    "--strict-markers",
    "--strict-config", 
    "--cov=book/tools",
    "--cov-report=term-missing",
    "--cov-report=html",
    "--cov-fail-under=80"
]
testpaths = ["tests", "book/tests"]
python_files = ["test_*.py", "*_test.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]
markers = [
    "slow: marks tests as slow (deselect with '-m \"not slow\"')",
    "integration: marks tests as integration tests",
    "unit: marks tests as unit tests",
    "ai: marks tests that require AI models",
]

# Coverage configuration
[tool.coverage.run]
source = ["book/tools"]
branch = true
omit = [
    "*/tests/*",
    "*/test_*",
    "*/__pycache__/*",
    "*/.*",
]

[tool.coverage.report]
exclude_lines = [
    "pragma: no cover",
    "def __repr__",
    "if self.debug:",
    "if settings.DEBUG",
    "raise AssertionError",
    "raise NotImplementedError",
    "if 0:",
    "if __name__ == .__main__.:",
    "class .*\\bProtocol\\):",
    "@(abc\\.)?abstractmethod",
]

# Pylint configuration
[tool.pylint.messages_control]
disable = [
    "C0330",  # Wrong hanging indentation before block (conflicts with black)
    "C0326",  # Bad whitespace (conflicts with black)
    "R0903",  # Too few public methods (sometimes OK for data classes)
    "R0913",  # Too many arguments (sometimes necessary)
]

[tool.pylint.format]
max-line-length = "100"

[tool.pylint.design]
max-args = 8
max-locals = 20
max-branches = 15
max-statements = 60

# Bandit security linting
[tool.bandit]
exclude_dirs = ["tests", "book/quarto/contents", "book/quarto"]
skips = ["B101", "B601"]  # Skip assert_used and shell=True (sometimes needed)

# Flake8 configuration (in setup.cfg or .flake8 file)
# Note: flake8 doesn't support pyproject.toml yet