42 Commits
Author SHA1 Message Date
Vijay Janapa Reddi 9212055f4c Install Binder CLI dependency in taxonomy validation environments 2026-11-05 00:41:48 +01:00
Vijay Janapa Reddi 82757cc8d4 Merge dev into taxonomy branch for integration 2026-11-04 22:03:35 +01:00
Vijay Janapa Reddi 649d2954bb Refine taxonomy editorial workflow, presentation, and documentation 2026-11-04 22:03:03 +01:00
Vijay Janapa Reddi 6625fbf6c2 Harden taxonomy governance validators, CI checks, and Bucket A receipts 2026-11-04 01:21:46 +02:00
Vijay Janapa Reddi 32b31f27cf Harden taxonomy 1.0 governance, Path A staging, and Bucket A provenance receipts 2026-11-03 21:23:46 +02:00
Vijay Janapa Reddi 3c2c9e1380 Vol2 gold-standard pass: all 17 chapters, with author-reviewed restores
A ledger-carrying reader audit, tested by a skeptic, set what each chapter
fixed. Each chapter then had a narrative pass, an independent review, a
scope and coverage pass against its concept map, a disclosure and
teach-back check, a senior audit, and a check for lost teaching or
overstated claims, which restored what the passes had cut. A volume pass
reviewed seams and first use.

The author then reviewed the 123 high-risk changes. Nine passages where a
caveat or reason was lost, and two where one sentence returns beside the
rewrite, are restored: the ch02 failure-exposure takeaway, three ch03
caveats (sharded gradients, the two oversubscription ratios, rail hop
limits), the ch04 warm-cache naming, the ch09 MFU source, the ch11
consensus correction, two ch13 caveats (attestation, PUF prediction), and
two ch14 reasons (label delay, feature squeezing).

Files: the chapter .qmd for ch01-ch17; concept maps for ch03, ch05, ch06,
ch07, ch10, ch13, ch15 (quotes kept verbatim with the new prose); and
taxonomy/coverage-ledger.yml (one quote follows a ch08 sentence that now
ends in a cross-reference).
2026-11-03 16:19:58 +02:00
Vijay Janapa Reddi fedbb4c8f0 Complete taxonomy provenance replay, Seatbelt R2 refresh, and v3 burn ledger 2026-11-03 15:31:46 +02:00
Vijay Janapa Reddi 6682e03742 Harden taxonomy provenance replay, execution receipts, and governance charter 2026-11-03 09:08:21 +02:00
Vijay Janapa Reddi 5d51744cf9 Harden taxonomy refresh provenance gates and align study receipts 2026-11-03 04:19:52 +02:00
Vijay Janapa Reddi 49574db8eb Harden taxonomy refresh provenance, workspace isolation, and Phase 7 audit receipts 2026-11-03 01:42:41 +02:00
Vijay Janapa Reddi f1fd3c5263 taxonomy: remediate 3-org Run 5 audit blockers and add term-provenance sidecar 2026-11-03 00:16:46 +02:00
Vijay Janapa Reddi cab90676fb fix(taxonomy): harden refresh gates, audit receipts, and upward-posted aliases 2026-11-02 23:12:36 +02:00
Vijay Janapa Reddi bf1085ec7a fix(taxonomy): resolve 3-org audit findings on aliases, reconcile gates, and method docs 2026-11-02 21:58:14 +02:00
Vijay Janapa Reddi 6efa3aa81a resolve Run 2 3-org audit blockers in aliases, reconcile.py, and docs 2026-11-02 21:14:55 +02:00
Vijay Janapa Reddi e91e685f75 tighten Phase 7 aliases, reconcile.py gates, and audit receipt accounting 2026-11-02 20:43:37 +02:00
Vijay Janapa Reddi d2ce4ac0cf Complete taxonomy method study, Bucket A alias updates, and Z39.19 workflow documentation 2026-11-02 19:57:54 +02:00
Vijay Janapa Reddi 1b26c03611 docs(taxonomy): pre-register Phase 3 two-area test (P4 and Q4) with seed 20261103 2026-11-02 17:08:18 +02:00
Vijay Janapa Reddi 8db6fa5a8b docs(taxonomy): add Phase 2 synthesized method and sampling frame specs 2026-11-02 16:07:02 +02:00
Vijay Janapa Reddi be0837c4f3 taxonomy(method-study): freeze pre-registered evaluation rubric and Phase 1 blind brief 2026-11-02 15:01:49 +02:00
Vijay Janapa Reddi 4134f1c741 Merge dev into feat/taxonomy-audit-2026-11 for retire 2026-11-02 14:33:02 +02:00
Vijay Janapa Reddi 284b2964a2 taxonomy: adopt Z39.19 and SKOS as the stated construction and representation standards
METHOD.md marks each applicable clause met, partial, or open, including the
departures: no expert committee, no human indexing trial, and model-assisted
decisions the standard assumes people make.

- Two audits applied the all-and-some test to 127 specializes edges; the 27
  both failed are retyped or removed, and specializes now exports as
  skos:broader while part-of stays associative under Z39.19 8.3.3.2
- Compiler enforces SKOS S27; tests validate the export
- Concepts record added_in and computed warrant counts
- Release adds an OWL relations vocabulary, DCAT metadata, CITATION.cff,
  scope notes, and redirect pages for identifiers
- Agreement reports Hooper and Rolling consistency
2026-11-02 14:21:39 +02:00
Vijay Janapa Reddi f713ec7b5c taxonomy: 0.4-draft, the second periodic review with an audit prune
878 concepts (+71 net), 2,020 relationships (+326, -25, 25 reworded), 27
redefinitions, 67 alias sets, 33 background tags, 6 moves; guides 16 roles,
24 symptoms, 7 paths; gaps: attention-FFN disaggregation closed, verifiable
ML computation and reasoning-trace monitoring declared. Coverage judgments
updated for the new concepts and a blind held-out checklist added
(OSDI/NSDI/EuroSys/ASPLOS 2026, 202 papers, 22.3% covered, 96.5% homed).

Symptoms now declare the quantity they are measured by (`quantities`), so a
symptom's own metric no longer poses as a cause; the compiler, the StaffML
loader, and the explorer accept a check or lever that touches a cause or the
quantity and reject a quantity listed in another bucket.

README and CHANGELOG record the method, the numbers, and the open author
decisions.
2026-11-02 12:23:35 +02:00
Vijay Janapa Reddi c7f3a7cccf Align taxonomy website, docs, and source prose with Classic Expository Style 2026-11-02 09:59:57 +02:00
Vijay Janapa Reddi df7fceb56c Add taxonomy community feedback issue template and clarify book motivation in lede 2026-11-02 09:09:25 +02:00
Vijay Janapa Reddi cec2230543 Add taxonomy usage dropdown and deduplicate taxonomy compiler and frontend 2026-11-01 10:15:51 +02:00
Vijay Janapa Reddi 532e793fb2 fix(taxonomy): resolve red-team and anti-reward-hack audit findings across schema, CI, and consumers 2026-10-31 23:16:49 +02:00
Vijay Janapa Reddi 3d0fafa10a feat(ci): add taxonomy validate-dev and preview-dev workflows; gate taxonomy publish on them 2026-10-31 14:36:43 +02:00
Vijay Janapa Reddi 0d0448f8ad feat(ci): add standalone taxonomy-publish-live workflow 2026-10-31 07:46:27 +02:00
Vijay Janapa Reddi ae25ccccbd feat(taxonomy): enforce end-to-end LinkML single source of truth across Binder, StaffML, and site 2026-10-30 19:05:39 +02:00
Vijay Janapa Reddi 6d91373366 refactor(taxonomy): remove legacy split-file fallbacks and document single source of truth 2026-10-30 15:15:19 +02:00
Vijay Janapa Reddi 2288cf53bb feat(taxonomy): unify authored taxonomy into single canonical ml-systems-taxonomy.yml 2026-10-30 14:42:49 +02:00
Vijay Janapa Reddi 52178b6939 build(taxonomy): harden LinkML single source of truth, StaffML labels sync, and CI gates 2026-10-30 13:42:40 +02:00
Vijay Janapa Reddi 0de606c2c4 fix(taxonomy): enforce anti-reward-hacking rules and validate release JSON against LinkML schema 2026-10-30 08:42:57 +01:00
Vijay Janapa Reddi 4ca46d0f03 docs(taxonomy): add LinkML slot descriptions and canonical dcterms prefix 2026-10-29 21:29:01 +01:00
Vijay Janapa Reddi 68ea73f4c8 feat(taxonomy): port metamodel validation to LinkML and show Concept map first 2026-10-29 19:10:10 +01:00
Vijay Janapa Reddi c78a2d09cb fix(taxonomy): harden 0.3-draft graph relations, guides, coverage, alignment, and visualizations 2026-10-29 18:06:28 +01:00
Vijay Janapa Reddi 34806af816 Add fullscreen mode and verify coupling, alluvial, symptom, and arc visuals 2026-10-29 16:57:32 +01:00
Vijay Janapa Reddi feea7010ed feat(taxonomy): add interactive coupling, alluvial, triage, and path figures 2026-10-29 14:57:35 +01:00
Vijay Janapa Reddi d5ae83a5b7 Taxonomy changelog and StaffML labels for 807 concepts 2026-10-28 16:32:51 +01:00
Vijay Janapa Reddi 1831d8a7c3 Taxonomy: two held-out clusters that meet the two-source rule
Model swapping and residency (Aegaeon, CoServe) and KV-cache memory
allocation (vAttention, Jenga; paged KV becomes its block-based form),
checked by gpt-6.1-sol, gemini-4-argon-high, and claude-opus-5-5. The
2025 systems-venue set rises to 63.0% covered (85 of 135).
2026-10-28 16:32:46 +01:00
Vijay Janapa Reddi 233648388f Taxonomy: 119 book links agreed by two independent models
Concepts that point into a specific book section rise from 86 to 190 of
805 (221 links). Each link was proposed by gpt-6.1-sol and claude-opus-5-5
independently and read before recording; four agreed links were dropped
as neighbors rather than what the passage teaches.
2026-10-28 15:45:19 +01:00
Vijay Janapa Reddi 983e7649e2 Consolidate ML Systems Taxonomy into root taxonomy/ directory 2026-10-28 08:02:35 +01:00