diff --git a/.changeset/microsoft-jwks-alg-omission.md b/.changeset/microsoft-jwks-alg-omission.md
new file mode 100644
index 0000000000..1e4b9bc5b0
--- /dev/null
+++ b/.changeset/microsoft-jwks-alg-omission.md
@@ -0,0 +1,5 @@
+---
+"@better-auth/core": patch
+---
+
+Fixed Microsoft Entra ID sign-in with an ID token (`signIn.social` with `idToken`, and linking an account with an ID token) rejecting every token. Microsoft publishes its signing keys without an `alg` field, which made verification fail. Those keys are now treated as RS256, and Microsoft ID tokens signed with any other algorithm are rejected. The redirect sign-in flow was not affected.
diff --git a/packages/core/src/social-providers/microsoft-entra-id.test.ts b/packages/core/src/social-providers/microsoft-entra-id.test.ts
index 55b3be6fac..6f5406b6e6 100644
--- a/packages/core/src/social-providers/microsoft-entra-id.test.ts
+++ b/packages/core/src/social-providers/microsoft-entra-id.test.ts
@@ -14,6 +14,7 @@ import { microsoft } from "./microsoft-entra-id";
 const mockedBetterFetch = vi.mocked(betterFetch);
 
 const CLIENT_ID = "ms-app";
+const CLIENT_SECRET = "ms-secret";
 const AUTHORITY = "https://login.microsoftonline.com";
 const CONSUMER_TENANT_ID = "9188040d-6c67-4c5b-b112-36a304b66dad";
 const WORK_TENANT_ID = "11111111-2222-3333-4444-555555555555";
@@ -27,7 +28,6 @@ beforeEach(async () => {
 	privateKey = keyPair.privateKey;
 	publicJWK = await exportJWK(keyPair.publicKey);
 	publicJWK.kid = KID;
-	publicJWK.alg = "RS256";
 	publicJWK.use = "sig";
 
 	mockedBetterFetch.mockReset();
@@ -278,3 +278,64 @@ describe("microsoft account subject", () => {
 		expect(mockedBetterFetch).not.toHaveBeenCalled();
 	});
 });
+
+/**
+ * @see https://github.com/better-auth/better-auth/issues/11652
+ */
+describe("microsoft id_token alg omission", () => {
+	it("verifies a token when Microsoft's JWKS keys omit alg", async () => {
+		const provider = microsoft({
+			clientId: CLIENT_ID,
+			clientSecret: CLIENT_SECRET,
+		});
+
+		const token = await new SignJWT({
+			sub: "user-123",
+			email: "user@example.com",
+			tid: WORK_TENANT_ID,
+		})
+			.setProtectedHeader({ alg: "RS256", kid: KID })
+			.setIssuer(`${AUTHORITY}/${WORK_TENANT_ID}/v2.0`)
+			.setAudience(CLIENT_ID)
+			.setExpirationTime("1h")
+			.setIssuedAt()
+			.sign(privateKey);
+
+		const isValid = await verifyProviderIdToken(provider, token);
+		expect(isValid).toBe(true);
+	});
+
+	it("rejects a token signed with an algorithm other than RS256", async () => {
+		const ecKeyPair = await generateKeyPair("ES256", { extractable: true });
+		const ecJWK = await exportJWK(ecKeyPair.publicKey);
+		const ecKid = "ms-test-es256-key";
+		ecJWK.kid = ecKid;
+		ecJWK.alg = "ES256";
+		ecJWK.use = "sig";
+
+		mockedBetterFetch.mockResolvedValueOnce({
+			data: { keys: [ecJWK] },
+			error: null,
+		} as Awaited<ReturnType<typeof betterFetch>>);
+
+		const provider = microsoft({
+			clientId: CLIENT_ID,
+			clientSecret: CLIENT_SECRET,
+		});
+
+		const token = await new SignJWT({
+			sub: "user-123",
+			email: "user@example.com",
+			tid: WORK_TENANT_ID,
+		})
+			.setProtectedHeader({ alg: "ES256", kid: ecKid })
+			.setIssuer(`${AUTHORITY}/${WORK_TENANT_ID}/v2.0`)
+			.setAudience(CLIENT_ID)
+			.setExpirationTime("1h")
+			.setIssuedAt()
+			.sign(ecKeyPair.privateKey);
+
+		const isValid = await verifyProviderIdToken(provider, token);
+		expect(isValid).toBe(false);
+	});
+});
diff --git a/packages/core/src/social-providers/microsoft-entra-id.ts b/packages/core/src/social-providers/microsoft-entra-id.ts
index db0846b409..22d9e28da2 100644
--- a/packages/core/src/social-providers/microsoft-entra-id.ts
+++ b/packages/core/src/social-providers/microsoft-entra-id.ts
@@ -228,6 +228,7 @@ export const microsoft = (options: MicrosoftOptions) => {
 		},
 		idToken: {
 			jwks: (header) => getMicrosoftPublicKey(header.kid!, tenant, authority),
+			algorithms: ["RS256"],
 			audience: options.clientId,
 			maxTokenAge: "1h",
 			/**
@@ -370,7 +371,7 @@ export const getMicrosoftPublicKey = async (
 	const { data } = await betterFetch<{
 		keys: Array<{
 			kid: string;
-			alg: string;
+			alg?: string;
 			kty: string;
 			use: string;
 			n: string;
@@ -391,5 +392,6 @@ export const getMicrosoftPublicKey = async (
 		throw new Error(`JWK with kid ${kid} not found`);
 	}
 
-	return await importJWK(jwk, jwk.alg);
+	// Microsoft's key set omits `alg`; Entra ID signs ID tokens with RS256.
+	return await importJWK(jwk, jwk.alg ?? "RS256");
 };