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- Remove outdated documentation files (cli-reorganization, command-cleanup-summary, module-metadata-system, testing-separation) - Update all CLI commands to use current hierarchical structure (tito system/module/package) - Align documentation with simplified metadata system - Update student project guide with current module structure - Modernize development guides and quick reference - Remove references to removed features (py_to_notebook, complex metadata) - Ensure all documentation reflects current system state Documentation now focuses on: - Current CLI structure and commands - Simplified module development workflow - Real data and production patterns - Clean educational progression