From 34ef876be5cc2a587e3c70314a9cc9519f43f19b Mon Sep 17 00:00:00 2001
From: GuillaumeG <guipagui@gmail.com>
Date: Fri, 5 Jan 2024 18:36:51 +0100
Subject: [PATCH] Add [galaxytoolshed] Version (#8249)

* feat(services): galaxytoolshed, add version and update base schema

* fix(services): galaxytoolshed, update schema

* fix(services): galaxytoolshed, preview updated

* fix(services): galaxytoolshed, enable openApi for version

* fix(services): galaxytoolshed, version labels
---
 .../galaxytoolshed-version.service.js         | 107 ++++++++++++++++++
 .../galaxytoolshed-version.tester.js          |  51 +++++++++
 2 files changed, 158 insertions(+)
 create mode 100644 services/galaxytoolshed/galaxytoolshed-version.service.js
 create mode 100644 services/galaxytoolshed/galaxytoolshed-version.tester.js

diff --git a/services/galaxytoolshed/galaxytoolshed-version.service.js b/services/galaxytoolshed/galaxytoolshed-version.service.js
new file mode 100644
index 0000000000..90f9b88cde
--- /dev/null
+++ b/services/galaxytoolshed/galaxytoolshed-version.service.js
@@ -0,0 +1,107 @@
+import { NotFound, pathParams } from '../index.js'
+import { renderVersionBadge } from '../version.js'
+import GalaxyToolshedService from './galaxytoolshed-base.js'
+
+export class GalaxyToolshedVersion extends GalaxyToolshedService {
+  static category = 'version'
+  static route = {
+    base: 'galaxytoolshed/v',
+    pattern: ':repository/:owner/:tool?/:requirement?',
+  }
+
+  static openApi = {
+    '/galaxytoolshed/v/{repository}/{owner}': {
+      get: {
+        summary: 'Galaxy Toolshed - Repository Version',
+        parameters: pathParams(
+          {
+            name: 'repository',
+            example: 'sra_tools',
+          },
+          {
+            name: 'owner',
+            example: 'iuc',
+          },
+        ),
+      },
+    },
+    '/galaxytoolshed/v/{repository}/{owner}/{tool}': {
+      get: {
+        summary: 'Galaxy Toolshed - Tool Version',
+        parameters: pathParams(
+          {
+            name: 'repository',
+            example: 'sra_tools',
+          },
+          {
+            name: 'owner',
+            example: 'iuc',
+          },
+          {
+            name: 'tool',
+            example: 'fastq_dump',
+          },
+        ),
+      },
+    },
+    '/galaxytoolshed/v/{repository}/{owner}/{tool}/{requirement}': {
+      get: {
+        summary: 'Galaxy Toolshed - Tool Requirement Version',
+        parameters: pathParams(
+          {
+            name: 'repository',
+            example: 'sra_tools',
+          },
+          {
+            name: 'owner',
+            example: 'iuc',
+          },
+          {
+            name: 'tool',
+            example: 'fastq_dump',
+          },
+          {
+            name: 'requirement',
+            example: 'perl',
+          },
+        ),
+      },
+    },
+  }
+
+  static transform({ response, tool, requirement }) {
+    if (tool !== undefined) {
+      const dataTool = response[1].valid_tools.find(x => x.id === tool)
+      if (dataTool === undefined) {
+        throw new NotFound({ prettyMessage: 'tool not found' })
+      }
+      // Requirement version
+      if (requirement !== undefined) {
+        const dataRequirement = dataTool.requirements.find(
+          x => x.name === requirement,
+        )
+        if (dataRequirement === undefined) {
+          throw new NotFound({ prettyMessage: 'requirement not found' })
+        }
+        return dataRequirement.version
+      }
+      // Tool version
+      return dataTool.version
+    }
+    // Repository version
+    return response[1].changeset_revision
+  }
+
+  async handle({ repository, owner, tool, requirement }) {
+    const response = await this.fetchLastOrderedInstallableRevisionsSchema({
+      repository,
+      owner,
+    })
+    const version = this.constructor.transform({
+      response,
+      tool,
+      requirement,
+    })
+    return renderVersionBadge({ version })
+  }
+}
diff --git a/services/galaxytoolshed/galaxytoolshed-version.tester.js b/services/galaxytoolshed/galaxytoolshed-version.tester.js
new file mode 100644
index 0000000000..bc14a6749d
--- /dev/null
+++ b/services/galaxytoolshed/galaxytoolshed-version.tester.js
@@ -0,0 +1,51 @@
+import { withRegex, isVPlusTripleDottedVersion } from '../test-validators.js'
+import { createServiceTester } from '../tester.js'
+
+export const t = await createServiceTester()
+
+t.create('version - repository')
+  .get('/sra_tools/iuc.json')
+  .expectBadge({
+    label: 'galaxytoolshed',
+    message: withRegex(/^([\w\d]+)$/),
+  })
+t.create('version - tool').get('/sra_tools/iuc/fastq_dump.json').expectBadge({
+  label: 'galaxytoolshed',
+  message: isVPlusTripleDottedVersion,
+})
+t.create('version - requirement')
+  .get('/sra_tools/iuc/fastq_dump/perl.json')
+  .expectBadge({
+    label: 'galaxytoolshed',
+    message: isVPlusTripleDottedVersion,
+  })
+
+// Not found
+t.create('version - changesetRevision not found')
+  .get('/bioqc/badilla.json')
+  .expectBadge({
+    label: 'galaxytoolshed',
+    message: 'changesetRevision not found',
+  })
+t.create('version - repository not found')
+  .get('/sra_too/iuc.json')
+  .expectBadge({
+    label: 'galaxytoolshed',
+    message: 'not found',
+  })
+t.create('version - owner not found').get('/sra_tool/iu.json').expectBadge({
+  label: 'galaxytoolshed',
+  message: 'not found',
+})
+t.create('version - tool not found')
+  .get('/sra_tools/iuc/fastq_dum.json')
+  .expectBadge({
+    label: 'galaxytoolshed',
+    message: 'tool not found',
+  })
+t.create('version - requirement not found')
+  .get('/sra_tools/iuc/fastq_dump/per.json')
+  .expectBadge({
+    label: 'galaxytoolshed',
+    message: 'requirement not found',
+  })